- Holmes, E. Katunguka-Rwakishaya, J. J. Benison, G. J. Wassink and J. J. Parkins. Impact of nutrition on the pathophysiology of bovine trypanosomiasis P. In Parasitology, No. 120, S73-S85.Ed. Edited by Richard J. Martin, Henk D. F. H. Schallig, General editor L. H. Chappell, Published by Cambridge University Press. ISBN 0521794382
- Waiswa, R. Azuba Musoke and E. Katunguka Rwakishaya. Animal Trypanosomiasis in Uganda: Differential diagnosis, Treatment and Control. In: in Important Parasitic Diseases of Livestock in Uganda, Pages 109-141. Edited by E. Katunguka Rwakishaya and C. Rubaire Akiiki, Fountain Publishers, Date Published 2008, ISBN 978 9970 02768 2
- Katunguka Rwakishaya, Jason Ndikuwera, R. Auba Musoke and B. Babigumira. A quick guide to differential diagnosis and Management of common diseases/conditions of cattle in Uganda. A Quick Guide to Livestock Health and Management in Uganda…Pp 1-59. Edited by. E. Katunguka Rwakishaya. Fountain Publishers, Date Published 2008, ISBN 978 9970 02 762 0
- Byarugaba, E. Katunguka Rwakishaya. Health Management in Small Holder Backyard Poultry Production. A Quick Guide to Livestock Health and Management pp 153-215. Ed. By E. Katunguka Rwakishaya. Fountain Publishers, Date Published 2008, ISBN 978 9970 02 762 0
- S. Biryomumaisho and E. Katunguka Rwakishaya. The Pathogenesis of Anaemia in African Animal Trypanosomiasis. (2012) anaemia, by Donald S. Silverberg. Published by In Tech Open access publisher ISBN978-953-51-0138-3. First Published in February 2012. Available at www.intechopen.com. Pp
- Katunguka-Rwakishaya E., Nasinyama G.W., Wabwire J.K.W., Ssembatya V.A., Kabuye M.K.Coordination of development cooperation at Makerere University (2000—2010) – opportunities, challenges and lessons learned. In Synergy in Action: Coordination of Cooperation Programmes in Higher Education and Research. Editor Ad Boeren, NUFFIC 2013. ISBN 978-90-5464-056-1
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